Costa-Rica-2-redo-SW
PSP 10004
DNA Source: SporeWorks
General Information
- Accession Date
- May 31, 2021
- Report Type
- Whole-Genome Sequencing
- DNA Source Website
- sporeworks.com
Genetic Information
File Downloads
These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.
- No. of Contigs (>= 25K bp)
- 1
- No. of Contigs (>= 50K bp)
- 0
- Total Length (>= 25K bp)
- 26,667
- Total Length (>= 50K bp)
- 0
- Total Contigs
- 19,534
- Largest Contig
- 26,667
- Total Length
- 13,997,869
- GC (%)
- 45.39
- N50
- 694
Variants
| PsiR | c.841G>A | p.Val281Ile | missense variant | moderate | CM039007.1 | 1655933 | C/T |
| PsiR | c.572T>C | p.Met191Thr | missense variant | moderate | CM039007.1 | 1656260 | A/G |
| PsiT1 | c.104A>G | p.Gln35Arg | missense variant | moderate | CM039007.1 | 1663528 | A/G |
| PsiT1 | c.362A>G | p.Glu121Gly | missense variant & splice region variant | moderate | CM039007.1 | 1663786 | A/G |
| PsiT1 | c.365-1G>A | splice acceptor variant & intron variant | high | CM039007.1 | 1663847 | G/A | |
| PsiT1 | c.640A>C | p.Ile214Leu | missense variant | moderate | CM039007.1 | 1664184 | A/C |
| PsiT1 | c.737C>T | p.Thr246Ile | missense variant | moderate | CM039007.1 | 1664333 | C/T |
| PsiT1 | c.798A>T | p.Arg266Ser | missense variant | moderate | CM039007.1 | 1664394 | A/T |
| PsiT1 |
c.1007_1008i |
p.Ala337fs | frameshift variant | high | CM039007.1 | 1664602 | CC/CCGATC |
| PsiT1 | c.1156A>G | p.Thr386Ala | missense variant | moderate | CM039007.1 | 1664803 | A/G |
| PsiT1 | c.1513A>G | p.Ile505Val | missense variant | moderate | CM039007.1 | 1665277 | A/G |
| PsiT1 | c.1616A>G | p.His539Arg | missense variant | moderate | CM039007.1 | 1665560 | A/G |
| PsiT1 | c.1626G>A | p.Met542Ile | missense variant | moderate | CM039007.1 | 1665570 | G/A |
| PsiT1 |
c.1644_1649d |
p.Phe549_Gly |
disruptive inframe deletion | moderate | CM039007.1 | 1665583 |
ATTGGTTTTGG/ |
| PsiT1 | c.1687A>C | p.Ile563Leu | missense variant | moderate | CM039007.1 | 1665631 | A/C |
| PsiT1 | c.1690G>A | p.Val564Ile | missense variant | moderate | CM039007.1 | 1665634 | G/A |
| PsiT1 | c.1735G>A | p.Val579Ile | missense variant | moderate | CM039007.1 | 1666040 | G/A |
| PsiT1 | c.1736T>C | p.Val579Ala | missense variant | moderate | CM039007.1 | 1666041 | T/C |
| PsiT1 | c.2038T>G | p.Ser680Ala | missense variant | moderate | CM039007.1 | 1666406 | T/G |
| PsiT1 | c.2065T>G | p.Leu689Val | missense variant | moderate | CM039007.1 | 1666433 | T/G |
| PsiT1 | c.2237A>G | p.Glu746Gly | missense variant | moderate | CM039007.1 | 1666605 | A/G |
| PsiT1 | c.2254A>G | p.Arg752Gly | missense variant | moderate | CM039007.1 | 1666622 | A/G |
| PsiT1 | c.2516T>C | p.Leu839Ser | missense variant | moderate | CM039007.1 | 1666884 | T/C |
| PsiH | c.88G>T | p.Gly30Trp | missense variant | moderate | CM039007.1 | 1667598 | G/T |
| PsiH | c.708G>T | p.Lys236Asn | missense variant | moderate | CM039007.1 | 1668429 | G/T |
| PsiM | c.305G>A | p.Arg102Lys | missense variant | moderate | CM039007.1 | 1674573 | C/T |
| PsiM | c.227T>C | p.Leu76Ser | missense variant & splice region variant | moderate | CM039007.1 | 1674651 | A/G |
| PsiM | c.110T>C | p.Val37Ala | missense variant | moderate | CM039007.1 | 1674922 | A/G |
| PsiD | c.66G>T | p.Leu22Phe | missense variant | moderate | CM039007.1 | 1677485 | C/A |
| PsiD | c.5A>G | p.Gln2Arg | missense variant | moderate | CM039007.1 | 1677603 | T/C |
| Fvcpc2 | c.173T>G | p.Ile58Ser | missense variant | moderate | CM038999.1 | 1972880 | T/G |
| Fvcpc2 | c.190C>G | p.His64Asp | missense variant | moderate | CM038999.1 | 1972897 | C/G |
Nearest genetic relatives (All Samples)
0
0.100
0.200
0.300
0.400
- 0.210 Costa-Rica-3-redo-SW (PSP10024)
- 0.233 Costa-Rica-2-redo-SW (PSP10023)
- 0.239 Costa-Rica-1-redo-SW (PSP10022)
- 0.264 Costa-Rica-1-redo-SW (PSP10003)
- 0.341 Penvy-2-SW (PSP10075)
- 0.342 Penvy-Col5-PS (PSP10044)
- 0.342 Penvy-1-PS (PSP10045)
- 0.342 Penvy-Col4-PS (PSP10043)
- 0.356 MGC 2016 unknown strain (PSP10012)
- 0.357 Orissa-India-4-Mush (PSP10073)
- 0.360 Roatan-Honduras-4-Mush (PSP10079)
- 0.360 Chitwan-1-SW (PSP10002)
- 0.361 Arenal-Volcano-1-Mush (PSP10059)
- 0.363 Luminous-lucies-2-PS (PSP10032)
- 0.363 Luminous-lucies-1-PS (PSP10034)
- 0.363 Luminous-lucies-3-PS (PSP10033)
- 0.375 Treasure-coast-1-PS (PSP10054)
- 0.375 Orissa-India-1-Mush (PSP10072)
- 0.375 Treasure-Coast-2-Mush (PSP10082)
- 0.375 Treasure-coast-3-PS (PSP10056)
Most genetically distant strains (All Samples)
0
0.142
0.283
0.425
0.567
- 0.556 Bplus-3-PS (PSP10001)
- 0.555 GoldenCoast-BAF-B1-UM (PSP10107)
- 0.555 GoldenCoast-BAF-B2-UM (PSP10108)
- 0.554 Puerto-Rican-ITW (PSP10078)
- 0.553 GoldenCoast-BAF-A1-UM (PSP10105)
- 0.553 True-Albino-Teacher-ITW-WM (PSP10140)
- 0.552 Orissa-India-ITW (PSP10071)
- 0.551 GoldenCoast-BAF-A2-UM (PSP10106)
- 0.551 Bplus-2-redo-SW (PSP10015)
- 0.551 Huautla-3-PS (PSP10005)
- 0.550 Huautla-3-redo-SW (PSP10031)
- 0.550 Maui-2-PS (PSP10041)
- 0.550 Avery-Albino-ITW-WM (PSP10123)
- 0.550 Huautla-2-redo-SW (PSP10030)
- 0.550 Gulf-Coast (PSP10091)
- 0.550 Bplus-1-redo-SW (PSP10014)
- 0.549 Bplus-3-redo-SW (PSP10016)
- 0.549 Gulf-Coast-BAF (PSP10090)
- 0.549 GoldenTeacher-3-SW (PSP10029)
- 0.548 Maui-1-PS (PSP10040)
Blockchain Registration Information
- Transaction ID
-
e1b9143040a81078
c1677b3fd0d1761f b4e9ccdea1cf7152 71224ac8a9a0884e - Stamping Certificate
- Download PDF (39.6 KB)
- SHASUM Hash
-
015d8274989d8fb06342110d3ba052ee fc5bd7f8d43e5014 e6dd761ae4a24e6b
