Costa-Rica-2-redo-SW

PSP 10004

DNA Source: SporeWorks

General Information

Accession Date
May 31, 2021
Report Type
Whole-Genome Sequencing
DNA Source Website
sporeworks.com

Genetic Information

These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.

Psilocybin Synthase Gene Coverage

Learn more about read coverage plots.

Read Coverage
No. of Contigs (>= 25K bp)
1
No. of Contigs (>= 50K bp)
0
Total Length (>= 25K bp)
26,626
Total Length (>= 50K bp)
0
Total Contigs
22,941
Largest Contig
26,626
Total Length
15,872,513
GC (%)
45.22
N50
664

Learn more about blob plots.

Blob Plot

Variants

PsiR c.841G>A p.Val281Ile missense variant moderate CM039007.1 1655933

IGV: Start, Jump

C/T
PsiR c.572T>C p.Met191Thr missense variant moderate CM039007.1 1656260

IGV: Start, Jump

A/G
PsiT1 c.104A>G p.Gln35Arg missense variant moderate CM039007.1 1663528

IGV: Start, Jump

A/G
PsiT1 c.362A>G p.Glu121Gly missense variant & splice region variant moderate CM039007.1 1663786

IGV: Start, Jump

A/G
PsiT1 c.365-1G>A splice acceptor variant & intron variant high CM039007.1 1663847

IGV: Start, Jump

G/A
PsiT1 c.640A>C p.Ile214Leu missense variant moderate CM039007.1 1664184

IGV: Start, Jump

A/C
PsiT1 c.737C>T p.Thr246Ile missense variant moderate CM039007.1 1664333

IGV: Start, Jump

C/T
PsiT1 c.798A>T p.Arg266Ser missense variant moderate CM039007.1 1664394

IGV: Start, Jump

A/T
PsiT1 c.1007_1008insGATC p.Ala337fs frameshift variant high CM039007.1 1664602

IGV: Start, Jump

CC/CCGATC
PsiT1 c.1156A>G p.Thr386Ala missense variant moderate CM039007.1 1664803

IGV: Start, Jump

A/G
PsiT1 c.1513A>G p.Ile505Val missense variant moderate CM039007.1 1665277

IGV: Start, Jump

A/G
PsiT1 c.1616A>G p.His539Arg missense variant moderate CM039007.1 1665560

IGV: Start, Jump

A/G
PsiT1 c.1626G>A p.Met542Ile missense variant moderate CM039007.1 1665570

IGV: Start, Jump

G/A
PsiT1 c.1644_1649delTTTTGG p.Phe549_Gly550del disruptive inframe deletion moderate CM039007.1 1665583

IGV: Start, Jump

ATTGGTTTTGG/ATTGG
PsiT1 c.1687A>C p.Ile563Leu missense variant moderate CM039007.1 1665631

IGV: Start, Jump

A/C
PsiT1 c.1690G>A p.Val564Ile missense variant moderate CM039007.1 1665634

IGV: Start, Jump

G/A
PsiT1 c.1735G>A p.Val579Ile missense variant moderate CM039007.1 1666040

IGV: Start, Jump

G/A
PsiT1 c.1736T>C p.Val579Ala missense variant moderate CM039007.1 1666041

IGV: Start, Jump

T/C
PsiT1 c.2038T>G p.Ser680Ala missense variant moderate CM039007.1 1666406

IGV: Start, Jump

T/G
PsiT1 c.2065T>G p.Leu689Val missense variant moderate CM039007.1 1666433

IGV: Start, Jump

T/G
PsiT1 c.2237A>G p.Glu746Gly missense variant moderate CM039007.1 1666605

IGV: Start, Jump

A/G
PsiT1 c.2254A>G p.Arg752Gly missense variant moderate CM039007.1 1666622

IGV: Start, Jump

A/G
PsiT1 c.2516T>C p.Leu839Ser missense variant moderate CM039007.1 1666884

IGV: Start, Jump

T/C
PsiH c.88G>T p.Gly30Trp missense variant moderate CM039007.1 1667598

IGV: Start, Jump

G/T
PsiH c.708G>T p.Lys236Asn missense variant moderate CM039007.1 1668429

IGV: Start, Jump

G/T
PsiM c.305G>A p.Arg102Lys missense variant moderate CM039007.1 1674573

IGV: Start, Jump

C/T
PsiM c.227T>C p.Leu76Ser missense variant & splice region variant moderate CM039007.1 1674651

IGV: Start, Jump

A/G
PsiM c.110T>C p.Val37Ala missense variant moderate CM039007.1 1674922

IGV: Start, Jump

A/G
PsiD c.66G>T p.Leu22Phe missense variant moderate CM039007.1 1677485

IGV: Start, Jump

C/A
PsiD c.5A>G p.Gln2Arg missense variant moderate CM039007.1 1677603

IGV: Start, Jump

T/C
Fvcpc2 c.173T>G p.Ile58Ser missense variant moderate CM038999.1 1972880

IGV: Start, Jump

T/G
Fvcpc2 c.190C>G p.His64Asp missense variant moderate CM038999.1 1972897

IGV: Start, Jump

C/G

Nearest genetic relatives (All Samples)

0 0.100 0.200 0.300 0.400
  1. 0.210 Costa-Rica-3-redo-SW (PSP10024)
  2. 0.233 Costa-Rica-2-redo-SW (PSP10023)
  3. 0.239 Costa-Rica-1-redo-SW (PSP10022)
  4. 0.264 Costa-Rica-1-redo-SW (PSP10003)
  5. 0.341 Penvy-2-SW (PSP10075)
  6. 0.342 Penvy-Col5-PS (PSP10044)
  7. 0.342 Penvy-1-PS (PSP10045)
  8. 0.342 Penvy-Col4-PS (PSP10043)
  9. 0.356 MGC 2016 unknown strain (PSP10012)
  10. 0.357 Orissa-India-4-Mush (PSP10073)
  11. 0.360 Roatan-Honduras-4-Mush (PSP10079)
  12. 0.360 Chitwan-1-SW (PSP10002)
  13. 0.361 Arenal-Volcano-1-Mush (PSP10059)
  14. 0.363 Luminous-lucies-2-PS (PSP10032)
  15. 0.363 Luminous-lucies-1-PS (PSP10034)
  16. 0.363 Luminous-lucies-3-PS (PSP10033)
  17. 0.375 Treasure-coast-1-PS (PSP10054)
  18. 0.375 Orissa-India-1-Mush (PSP10072)
  19. 0.375 Treasure-Coast-2-Mush (PSP10082)
  20. 0.375 Treasure-coast-3-PS (PSP10056)

Most genetically distant strains (All Samples)

0 0.142 0.283 0.425 0.567
  1. 0.556 Bplus-3-PS (PSP10001)
  2. 0.555 GoldenCoast-BAF-B1-UM (PSP10107)
  3. 0.555 GoldenCoast-BAF-B2-UM (PSP10108)
  4. 0.554 Puerto-Rican-ITW (PSP10078)
  5. 0.553 GoldenCoast-BAF-A1-UM (PSP10105)
  6. 0.553 True-Albino-Teacher-ITW-WM (PSP10140)
  7. 0.552 Orissa-India-ITW (PSP10071)
  8. 0.551 GoldenCoast-BAF-A2-UM (PSP10106)
  9. 0.551 Bplus-2-redo-SW (PSP10015)
  10. 0.551 Huautla-3-PS (PSP10005)
  11. 0.550 Huautla-3-redo-SW (PSP10031)
  12. 0.550 Maui-2-PS (PSP10041)
  13. 0.550 Avery-Albino-ITW-WM (PSP10123)
  14. 0.550 Huautla-2-redo-SW (PSP10030)
  15. 0.550 Gulf-Coast (PSP10091)
  16. 0.550 Bplus-1-redo-SW (PSP10014)
  17. 0.549 Bplus-3-redo-SW (PSP10016)
  18. 0.549 Gulf-Coast-BAF (PSP10090)
  19. 0.549 GoldenTeacher-3-SW (PSP10029)
  20. 0.548 Maui-1-PS (PSP10040)

Blockchain Registration Information

Transaction ID
e1b9143040a81078c1677b3fd0d1761fb4e9ccdea1cf715271224ac8a9a0884e
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
015d8274989d8fb06342110d3ba052eefc5bd7f8d43e5014e6dd761ae4a24e6b
QR code for PSP10004

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