MGC_2016_unknown_strain

PSP 10012

DNA Source: Medicinal Genomics

General Information

Accession Date
May 31, 2021
Report Type
Whole-Genome Sequencing

Genetic Information

These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.

Psilocybin Synthase Gene Coverage

Learn more about read coverage plots.

Read Coverage
No. of Contigs (>= 25K bp)
360
No. of Contigs (>= 50K bp)
135
Total Length (>= 25K bp)
19,566,166
Total Length (>= 50K bp)
11,855,100
Total Contigs
11,407
Largest Contig
264,158
Total Length
48,062,047
GC (%)
46.15
N50
15,932

Learn more about blob plots.

Blob Plot

Variants

PsiR c.1031C>T p.Ala344Val missense variant moderate CM039007.1 1655743

IGV: Start, Jump

G/A
PsiT1 c.362A>G p.Glu121Gly missense variant & splice region variant moderate CM039007.1 1663786

IGV: Start, Jump

A/G
PsiT1 c.640A>C p.Ile214Leu missense variant moderate CM039007.1 1664184

IGV: Start, Jump

A/C
PsiT1 c.737C>T p.Thr246Ile missense variant moderate CM039007.1 1664333

IGV: Start, Jump

C/T
PsiT1 c.798A>T p.Arg266Ser missense variant moderate CM039007.1 1664394

IGV: Start, Jump

A/T
PsiT1 c.802C>A p.Leu268Ile missense variant moderate CM039007.1 1664398

IGV: Start, Jump

C/A
PsiT1 c.1156A>G p.Thr386Ala missense variant moderate CM039007.1 1664803

IGV: Start, Jump

A/G
PsiT1 c.1513A>G p.Ile505Val missense variant moderate CM039007.1 1665277

IGV: Start, Jump

A/G
PsiT1 c.1616A>G p.His539Arg missense variant moderate CM039007.1 1665560

IGV: Start, Jump

A/G
PsiT1 c.1626G>A p.Met542Ile missense variant moderate CM039007.1 1665570

IGV: Start, Jump

G/A
PsiT1 c.1687A>C p.Ile563Leu missense variant moderate CM039007.1 1665631

IGV: Start, Jump

A/C
PsiT1 c.1690G>A p.Val564Ile missense variant moderate CM039007.1 1665634

IGV: Start, Jump

G/A
PsiT1 c.1714A>G p.Asn572Asp missense variant moderate CM039007.1 1665658

IGV: Start, Jump

A/G
PsiT1 c.1720+1G>T splice donor variant & intron variant high CM039007.1 1665665

IGV: Start, Jump

G/T
PsiT1 c.1735G>A p.Val579Ile missense variant moderate CM039007.1 1666040

IGV: Start, Jump

G/A
PsiT1 c.1736T>C p.Val579Ala missense variant moderate CM039007.1 1666041

IGV: Start, Jump

T/C
PsiT1 c.2038T>G p.Ser680Ala missense variant moderate CM039007.1 1666406

IGV: Start, Jump

T/G
PsiT1 c.2126T>C p.Val709Ala missense variant moderate CM039007.1 1666494

IGV: Start, Jump

T/C
PsiT1 c.2254A>G p.Arg752Gly missense variant moderate CM039007.1 1666622

IGV: Start, Jump

A/G
PsiM c.305G>A p.Arg102Lys missense variant moderate CM039007.1 1674573

IGV: Start, Jump

C/T
PsiD c.617G>A p.Gly206Asp missense variant moderate CM039007.1 1676885

IGV: Start, Jump

C/T
PsiD c.616G>A p.Gly206Ser missense variant moderate CM039007.1 1676886

IGV: Start, Jump

C/T
PsiD c.66G>T p.Leu22Phe missense variant moderate CM039007.1 1677485

IGV: Start, Jump

C/A

Nearest genetic relatives (All Samples)

0 0.092 0.183 0.275 0.367
  1. 0.281 Treasure-Coast-2-Mush (PSP10082)
  2. 0.282 Treasure-coast-1-PS (PSP10054)
  3. 0.282 Treasure-coast-2-PS (PSP10055)
  4. 0.282 Treasure-coast-3-PS (PSP10056)
  5. 0.301 Orissa-India-4-Mush (PSP10073)
  6. 0.314 Z-strain-1-Mush (PSP10083)
  7. 0.319 Golden-Teacher Denver (PSP10011)
  8. 0.321 Luminous-lucies-2-PS (PSP10032)
  9. 0.321 Luminous-lucies-1-PS (PSP10034)
  10. 0.321 Luminous-lucies-3-PS (PSP10033)
  11. 0.322 Arenal-Volcano-1-Mush (PSP10059)
  12. 0.323 Roatan-Honduras-4-Mush (PSP10079)
  13. 0.331 Orissa-India-1-Mush (PSP10072)
  14. 0.332 Penvy-2-SW (PSP10075)
  15. 0.332 Penvy-Col5-PS (PSP10044)
  16. 0.332 Penvy-Col4-PS (PSP10043)
  17. 0.332 Penvy-1-PS (PSP10045)
  18. 0.339 Costa-Rica-3-redo-SW (PSP10024)
  19. 0.340 Chitwan-1-SW (PSP10002)
  20. 0.349 Bplus-ITW-WM (PSP10129)

Most genetically distant strains (All Samples)

0 0.150 0.300 0.450 0.600
  1. 0.578 Orissa-India-print-ITW (PSP10074)
  2. 0.577 Bplus-3-PS (PSP10001)
  3. 0.577 Bplus (PSP10088)
  4. 0.576 HUA-Early (PSP10092)
  5. 0.575 GoldenCoast-BAF-A1-UM (PSP10105)
  6. 0.574 GoldenCoast-BAF-A2-UM (PSP10106)
  7. 0.574 Orissa-India-ITW (PSP10071)
  8. 0.574 True-Albino-Teacher-ITW-WM (PSP10140)
  9. 0.573 Avery-Albino-ITW-WM (PSP10123)
  10. 0.571 GoldenCoast-BAF-B2-UM (PSP10108)
  11. 0.571 GoldenCoast-BAF-B1-UM (PSP10107)
  12. 0.571 McKennaii-1-PS (PSP10069)
  13. 0.570 Gulf-Coast (PSP10091)
  14. 0.570 Gulf-Coast-BAF (PSP10090)
  15. 0.569 Burma-1-SW (PSP10020)
  16. 0.567 Cambodian--1-PS (PSP10060)
  17. 0.567 Golden-Teacher (PSP10089)
  18. 0.566 GoldenCoast-UM (PSP10109)
  19. 0.565 GoldenTeacher-3-SW (PSP10029)
  20. 0.565 Ecuador-3-SW (PSP10025)

Blockchain Registration Information

Transaction ID
6ba44194cc0da4a2ba77b3ef5ba3d6bb6ae37859cd3b4d114e11ff6258bf7461
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
3f5b833b0002012e642ba600168c77db59e2b2dbf1f2f9388c076f04cfdd6c9f
QR code for PSP10012

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