MGC_2016_unknown_strain
PSP 10012
DNA Source: Medicinal Genomics
General Information
- Accession Date
- May 31, 2021
- Report Type
- Whole-Genome Sequencing
Genetic Information
File Downloads
These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.
- No. of Contigs (>= 25K bp)
- 352
- No. of Contigs (>= 50K bp)
- 133
- Total Length (>= 25K bp)
- 19,513,131
- Total Length (>= 50K bp)
- 11,990,056
- Total Contigs
- 11,084
- Largest Contig
- 267,799
- Total Length
- 47,872,143
- GC (%)
- 46.12
- N50
- 16,304
Variants
| PsiR | c.1031C>T | p.Ala344Val | missense variant | moderate | CM039007.1 | 1655743 | G/A |
| PsiT1 | c.362A>G | p.Glu121Gly | missense variant & splice region variant | moderate | CM039007.1 | 1663786 | A/G |
| PsiT1 | c.640A>C | p.Ile214Leu | missense variant | moderate | CM039007.1 | 1664184 | A/C |
| PsiT1 | c.737C>T | p.Thr246Ile | missense variant | moderate | CM039007.1 | 1664333 | C/T |
| PsiT1 | c.798A>T | p.Arg266Ser | missense variant | moderate | CM039007.1 | 1664394 | A/T |
| PsiT1 | c.802C>A | p.Leu268Ile | missense variant | moderate | CM039007.1 | 1664398 | C/A |
| PsiT1 | c.1156A>G | p.Thr386Ala | missense variant | moderate | CM039007.1 | 1664803 | A/G |
| PsiT1 | c.1513A>G | p.Ile505Val | missense variant | moderate | CM039007.1 | 1665277 | A/G |
| PsiT1 | c.1616A>G | p.His539Arg | missense variant | moderate | CM039007.1 | 1665560 | A/G |
| PsiT1 | c.1626G>A | p.Met542Ile | missense variant | moderate | CM039007.1 | 1665570 | G/A |
| PsiT1 | c.1687A>C | p.Ile563Leu | missense variant | moderate | CM039007.1 | 1665631 | A/C |
| PsiT1 | c.1690G>A | p.Val564Ile | missense variant | moderate | CM039007.1 | 1665634 | G/A |
| PsiT1 | c.1714A>G | p.Asn572Asp | missense variant | moderate | CM039007.1 | 1665658 | A/G |
| PsiT1 | c.1720+1G>T | splice donor variant & intron variant | high | CM039007.1 | 1665665 | G/T | |
| PsiT1 | c.1735G>A | p.Val579Ile | missense variant | moderate | CM039007.1 | 1666040 | G/A |
| PsiT1 | c.1736T>C | p.Val579Ala | missense variant | moderate | CM039007.1 | 1666041 | T/C |
| PsiT1 | c.2038T>G | p.Ser680Ala | missense variant | moderate | CM039007.1 | 1666406 | T/G |
| PsiT1 | c.2126T>C | p.Val709Ala | missense variant | moderate | CM039007.1 | 1666494 | T/C |
| PsiT1 | c.2254A>G | p.Arg752Gly | missense variant | moderate | CM039007.1 | 1666622 | A/G |
| PsiM | c.305G>A | p.Arg102Lys | missense variant | moderate | CM039007.1 | 1674573 | C/T |
| PsiD | c.617G>A | p.Gly206Asp | missense variant | moderate | CM039007.1 | 1676885 | C/T |
| PsiD | c.616G>A | p.Gly206Ser | missense variant | moderate | CM039007.1 | 1676886 | C/T |
| PsiD | c.66G>T | p.Leu22Phe | missense variant | moderate | CM039007.1 | 1677485 | C/A |
Nearest genetic relatives (All Samples)
0
0.092
0.183
0.275
0.367
- 0.281 Treasure-Coast-2-Mush (PSP10082)
- 0.282 Treasure-coast-1-PS (PSP10054)
- 0.282 Treasure-coast-2-PS (PSP10055)
- 0.282 Treasure-coast-3-PS (PSP10056)
- 0.301 Orissa-India-4-Mush (PSP10073)
- 0.314 Z-strain-1-Mush (PSP10083)
- 0.319 Golden-Teacher Denver (PSP10011)
- 0.321 Luminous-lucies-2-PS (PSP10032)
- 0.321 Luminous-lucies-1-PS (PSP10034)
- 0.321 Luminous-lucies-3-PS (PSP10033)
- 0.322 Arenal-Volcano-1-Mush (PSP10059)
- 0.323 Roatan-Honduras-4-Mush (PSP10079)
- 0.331 Orissa-India-1-Mush (PSP10072)
- 0.332 Penvy-2-SW (PSP10075)
- 0.332 Penvy-Col5-PS (PSP10044)
- 0.332 Penvy-Col4-PS (PSP10043)
- 0.332 Penvy-1-PS (PSP10045)
- 0.339 Costa-Rica-3-redo-SW (PSP10024)
- 0.340 Chitwan-1-SW (PSP10002)
- 0.349 Bplus-ITW-WM (PSP10129)
Most genetically distant strains (All Samples)
0
0.150
0.300
0.450
0.600
- 0.578 Orissa-India-print-ITW (PSP10074)
- 0.577 Bplus-3-PS (PSP10001)
- 0.577 Bplus (PSP10088)
- 0.576 HUA-Early (PSP10092)
- 0.575 GoldenCoast-BAF-A1-UM (PSP10105)
- 0.574 GoldenCoast-BAF-A2-UM (PSP10106)
- 0.574 Orissa-India-ITW (PSP10071)
- 0.574 True-Albino-Teacher-ITW-WM (PSP10140)
- 0.573 Avery-Albino-ITW-WM (PSP10123)
- 0.571 GoldenCoast-BAF-B2-UM (PSP10108)
- 0.571 GoldenCoast-BAF-B1-UM (PSP10107)
- 0.571 McKennaii-1-PS (PSP10069)
- 0.570 Gulf-Coast (PSP10091)
- 0.570 Gulf-Coast-BAF (PSP10090)
- 0.569 Burma-1-SW (PSP10020)
- 0.567 Cambodian--1-PS (PSP10060)
- 0.567 Golden-Teacher (PSP10089)
- 0.566 GoldenCoast-UM (PSP10109)
- 0.565 GoldenTeacher-3-SW (PSP10029)
- 0.565 Ecuador-3-SW (PSP10025)
Blockchain Registration Information
- Transaction ID
-
6ba44194cc0da4a2
ba77b3ef5ba3d6bb 6ae37859cd3b4d11 4e11ff6258bf7461 - Stamping Certificate
- Download PDF (39.6 KB)
- SHASUM Hash
-
3f5b833b0002012e642ba600168c77db 59e2b2dbf1f2f938 8c076f04cfdd6c9f
