Costa-Rica-3-redo-SW
PSP 10024
DNA Source: SporeWorks
General Information
- Accession Date
- May 11, 2021
- Report Type
- Whole-Genome Sequencing
- DNA Source Website
- sporeworks.com
Genetic Information
File Downloads
These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.
- No. of Contigs (>= 25K bp)
- 0
- No. of Contigs (>= 50K bp)
- 0
- Total Length (>= 25K bp)
- 0
- Total Length (>= 50K bp)
- 0
- Total Contigs
- 30,057
- Largest Contig
- 13,933
- Total Length
- 27,215,546
- GC (%)
- 45.83
- N50
- 938
Variants
| PsiT1 | c.362A>G | p.Glu121Gly | missense variant & splice region variant | moderate | CM039007.1 | 1663786 | A/G |
| PsiT1 | c.640A>C | p.Ile214Leu | missense variant | moderate | CM039007.1 | 1664184 | A/C |
| PsiT1 | c.668C>G | p.Ser223* | stop gained | high | CM039007.1 | 1664264 | C/G |
| PsiT1 | c.737C>T | p.Thr246Ile | missense variant | moderate | CM039007.1 | 1664333 | C/T |
| PsiT1 | c.798A>T | p.Arg266Ser | missense variant | moderate | CM039007.1 | 1664394 | A/T |
| PsiT1 | c.1156A>G | p.Thr386Ala | missense variant | moderate | CM039007.1 | 1664803 | A/G |
| PsiT1 | c.1377T>A | p.Phe459Leu | missense variant | moderate | CM039007.1 | 1665085 | T/A |
| PsiT1 | c.1513A>G | p.Ile505Val | missense variant | moderate | CM039007.1 | 1665277 | A/G |
| PsiT1 | c.1616A>G | p.His539Arg | missense variant | moderate | CM039007.1 | 1665560 | A/G |
| PsiT1 | c.1626G>A | p.Met542Ile | missense variant | moderate | CM039007.1 | 1665570 | G/A |
| PsiT1 | c.1687A>C | p.Ile563Leu | missense variant | moderate | CM039007.1 | 1665631 | A/C |
| PsiT1 | c.1690G>A | p.Val564Ile | missense variant | moderate | CM039007.1 | 1665634 | G/A |
| PsiT1 | c.1714A>G | p.Asn572Asp | missense variant | moderate | CM039007.1 | 1665658 | A/G |
| PsiT1 | c.1720+1G>T | splice donor variant & intron variant | high | CM039007.1 | 1665665 | G/T | |
| PsiT1 | c.1735G>A | p.Val579Ile | missense variant | moderate | CM039007.1 | 1666040 | G/A |
| PsiT1 | c.1736T>C | p.Val579Ala | missense variant | moderate | CM039007.1 | 1666041 | T/C |
| PsiT1 | c.2038T>G | p.Ser680Ala | missense variant | moderate | CM039007.1 | 1666406 | T/G |
| PsiT1 | c.2065T>G | p.Leu689Val | missense variant | moderate | CM039007.1 | 1666433 | T/G |
| PsiT1 | c.2237A>G | p.Glu746Gly | missense variant | moderate | CM039007.1 | 1666605 | A/G |
| PsiT1 | c.2254A>G | p.Arg752Gly | missense variant | moderate | CM039007.1 | 1666622 | A/G |
| PsiT1 | c.2573A>T | p.Gln858Leu | missense variant | moderate | CM039007.1 | 1666941 | A/T |
| PsiH | c.708G>T | p.Lys236Asn | missense variant | moderate | CM039007.1 | 1668429 | G/T |
| PsiM | c.305G>A | p.Arg102Lys | missense variant | moderate | CM039007.1 | 1674573 | C/T |
| PsiM | c.225-2A>T | splice acceptor variant & intron variant | high | CM039007.1 | 1674655 | T/A | |
| PsiD | c.66G>T | p.Leu22Phe | missense variant | moderate | CM039007.1 | 1677485 | C/A |
| Fvcpc2 | c.601T>C | p.Ser201Pro | missense variant | moderate | CM038999.1 | 1973492 | T/C |
Nearest genetic relatives (All Samples)
0
0.083
0.167
0.250
0.333
- 0.128 Costa-Rica-2-redo-SW (PSP10023)
- 0.134 Costa-Rica-1-redo-SW (PSP10022)
- 0.202 Costa-Rica-1-redo-SW (PSP10003)
- 0.210 Costa-Rica-2-redo-SW (PSP10004)
- 0.296 Penvy-2-SW (PSP10075)
- 0.296 Penvy-Col5-PS (PSP10044)
- 0.296 Penvy-1-PS (PSP10045)
- 0.296 Penvy-Col4-PS (PSP10043)
- 0.310 Roatan-Honduras-4-Mush (PSP10079)
- 0.314 Arenal-Volcano-1-Mush (PSP10059)
- 0.316 Luminous-lucies-2-PS (PSP10032)
- 0.316 Luminous-lucies-3-PS (PSP10033)
- 0.316 Luminous-lucies-1-PS (PSP10034)
- 0.317 Treasure-coast-1-PS (PSP10054)
- 0.317 Treasure-coast-3-PS (PSP10056)
- 0.317 Treasure-Coast-2-Mush (PSP10082)
- 0.317 Treasure-coast-2-PS (PSP10055)
- 0.321 ColumbiaRust-1-SW (PSP10021)
- 0.328 Bplus-ITW-WM (PSP10129)
- 0.331 Orissa-India-4-Mush (PSP10073)
Most genetically distant strains (All Samples)
0
0.167
0.333
0.500
0.667
- 0.639 Bplus-3-PS (PSP10001)
- 0.637 GoldenCoast-BAF-A1-UM (PSP10105)
- 0.636 GoldenCoast-BAF-B1-UM (PSP10107)
- 0.635 GoldenCoast-BAF-B2-UM (PSP10108)
- 0.635 GoldenCoast-BAF-A2-UM (PSP10106)
- 0.635 Puerto-Rican-ITW (PSP10078)
- 0.634 Orissa-India-ITW (PSP10071)
- 0.633 Bplus-2-redo-SW (PSP10015)
- 0.632 Huautla-3-PS (PSP10005)
- 0.632 Bplus-1-redo-SW (PSP10014)
- 0.632 Bplus-3-redo-SW (PSP10016)
- 0.631 Maui-2-PS (PSP10041)
- 0.631 Huautla-3-redo-SW (PSP10031)
- 0.631 Huautla-2-redo-SW (PSP10030)
- 0.631 Ecuador-3-SW (PSP10025)
- 0.631 GoldenTeacher-3-SW (PSP10029)
- 0.630 McKennaii-1-PS (PSP10069)
- 0.630 Maui-3-PS (PSP10042)
- 0.630 True-Albino-Teacher-ITW-WM (PSP10140)
- 0.630 Maui-1-PS (PSP10040)
Blockchain Registration Information
- Transaction ID
-
8c50e820eef1c5e9
1e17155e896dc6f9 265bce833f924b44 3d238e95fad3096f - Stamping Certificate
- Download PDF (39.6 KB)
- SHASUM Hash
-
b6d4497f3c8e7e714c77dd267d999a13 dfb7999a15e42678 dc5966a05392361c
