Orissa-India-4-Mush

PSP 10073

DNA Source: Mushrooms.com

General Information

Accession Date
June 13, 2021
Report Type
Whole-Genome Sequencing
DNA Source Website
mushrooms.com

Genetic Information

These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.

Psilocybin Synthase Gene Coverage

Learn more about read coverage plots.

Read Coverage
No. of Contigs (>= 25K bp)
425
No. of Contigs (>= 50K bp)
181
Total Length (>= 25K bp)
25,978,451
Total Length (>= 50K bp)
17,413,925
Total Contigs
12,162
Largest Contig
432,341
Total Length
48,124,680
GC (%)
46.44
N50
29,444

Learn more about blob plots.

Blob Plot

Variants

PsiT1 c.362A>G p.Glu121Gly missense variant & splice region variant moderate CM039007.1 1663786

IGV: Start, Jump

A/G
PsiT1 c.365-1G>A splice acceptor variant & intron variant high CM039007.1 1663847

IGV: Start, Jump

G/A
PsiT1 c.640A>C p.Ile214Leu missense variant moderate CM039007.1 1664184

IGV: Start, Jump

A/C
PsiT1 c.737C>T p.Thr246Ile missense variant moderate CM039007.1 1664333

IGV: Start, Jump

C/T
PsiT1 c.798A>T p.Arg266Ser missense variant moderate CM039007.1 1664394

IGV: Start, Jump

A/T
PsiT1 c.1156A>G p.Thr386Ala missense variant moderate CM039007.1 1664803

IGV: Start, Jump

A/G
PsiT1 c.1513A>G p.Ile505Val missense variant moderate CM039007.1 1665277

IGV: Start, Jump

A/G
PsiT1 c.1616A>G p.His539Arg missense variant moderate CM039007.1 1665560

IGV: Start, Jump

A/G
PsiT1 c.1626G>A p.Met542Ile missense variant moderate CM039007.1 1665570

IGV: Start, Jump

G/A
PsiT1 c.1687A>C p.Ile563Leu missense variant moderate CM039007.1 1665631

IGV: Start, Jump

A/C
PsiT1 c.1690G>A p.Val564Ile missense variant moderate CM039007.1 1665634

IGV: Start, Jump

G/A
PsiT1 c.1714A>G p.Asn572Asp missense variant moderate CM039007.1 1665658

IGV: Start, Jump

A/G
PsiT1 c.1720+1G>T splice donor variant & intron variant high CM039007.1 1665665

IGV: Start, Jump

G/T
PsiT1 c.1735G>A p.Val579Ile missense variant moderate CM039007.1 1666040

IGV: Start, Jump

G/A
PsiT1 c.1736T>C p.Val579Ala missense variant moderate CM039007.1 1666041

IGV: Start, Jump

T/C
PsiT1 c.1864A>G p.Lys622Glu missense variant moderate CM039007.1 1666169

IGV: Start, Jump

A/G
PsiT1 c.2038T>G p.Ser680Ala missense variant moderate CM039007.1 1666406

IGV: Start, Jump

T/G
PsiT1 c.2065T>G p.Leu689Val missense variant moderate CM039007.1 1666433

IGV: Start, Jump

T/G
PsiT1 c.2237A>G p.Glu746Gly missense variant moderate CM039007.1 1666605

IGV: Start, Jump

A/G
PsiT1 c.2254A>G p.Arg752Gly missense variant moderate CM039007.1 1666622

IGV: Start, Jump

A/G
PsiT1 c.2573A>T p.Gln858Leu missense variant moderate CM039007.1 1666941

IGV: Start, Jump

A/T

Nearest genetic relatives (All Samples)

0 0.092 0.183 0.275 0.367
  1. 0.094 Orissa-India-1-Mush (PSP10072)
  2. 0.192 Penvy-2-SW (PSP10075)
  3. 0.192 Penvy-1-PS (PSP10045)
  4. 0.192 Penvy-Col5-PS (PSP10044)
  5. 0.192 Penvy-Col4-PS (PSP10043)
  6. 0.300 Roatan-Honduras-4-Mush (PSP10079)
  7. 0.301 MGC 2016 unknown strain (PSP10012)
  8. 0.316 Z-strain-1-Mush (PSP10083)
  9. 0.331 Costa-Rica-3-redo-SW (PSP10024)
  10. 0.331 Costa-Rica-1-redo-SW (PSP10022)
  11. 0.333 Costa-Rica-2-redo-SW (PSP10023)
  12. 0.337 Arenal-Volcano-1-Mush (PSP10059)
  13. 0.338 Bplus-ITW-WM (PSP10129)
  14. 0.340 Luminous-lucies-2-PS (PSP10032)
  15. 0.340 Luminous-lucies-1-PS (PSP10034)
  16. 0.340 Luminous-lucies-3-PS (PSP10033)
  17. 0.340 Treasure-Coast-2-Mush (PSP10082)
  18. 0.342 Treasure-coast-3-PS (PSP10056)
  19. 0.343 Treasure-coast-1-PS (PSP10054)
  20. 0.343 Treasure-coast-2-PS (PSP10055)

Most genetically distant strains (All Samples)

0 0.158 0.317 0.475 0.633
  1. 0.617 Bplus-3-PS (PSP10001)
  2. 0.613 GoldenCoast-BAF-B1-UM (PSP10107)
  3. 0.613 GoldenCoast-BAF-B2-UM (PSP10108)
  4. 0.613 GoldenCoast-BAF-A1-UM (PSP10105)
  5. 0.611 GoldenCoast-BAF-A2-UM (PSP10106)
  6. 0.610 Puerto-Rican-ITW (PSP10078)
  7. 0.610 Orissa-India-ITW (PSP10071)
  8. 0.610 Huautla-2-redo-SW (PSP10030)
  9. 0.609 Huautla-3-redo-SW (PSP10031)
  10. 0.609 Huautla-3-PS (PSP10005)
  11. 0.608 Gulf-Coast-BAF (PSP10090)
  12. 0.608 Gulf-Coast (PSP10091)
  13. 0.608 True-Albino-Teacher-ITW-WM (PSP10140)
  14. 0.607 Bplus-2-redo-SW (PSP10015)
  15. 0.606 Bplus-1-redo-SW (PSP10014)
  16. 0.606 Bplus-3-redo-SW (PSP10016)
  17. 0.606 Ecuador-3-SW (PSP10025)
  18. 0.606 Maui-2-PS (PSP10041)
  19. 0.606 GoldenTeacher-3-SW (PSP10029)
  20. 0.605 Avery-Albino-ITW-WM (PSP10123)

Blockchain Registration Information

Transaction ID
93f67d9c357b99fba5cad00ae91ae4bc50522bca5cd4300d162ca0e52cba432a
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
c044ed2ffa2d9efb8a049f67e17b6c8dc5e3b283bedd5f20f85bb407b50239b4
QR code for PSP10073

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