Orissa-India-ITW

PSP 10071

DNA Source: Inoculate the World

General Information

Accession Date
June 13, 2021
Report Type
Whole-Genome Sequencing
DNA Source Website
inoculatetheworld.com

Genetic Information

These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.

Psilocybin Synthase Gene Coverage

Learn more about read coverage plots.

Read Coverage
No. of Contigs (>= 25K bp)
411
No. of Contigs (>= 50K bp)
208
Total Length (>= 25K bp)
30,174,593
Total Length (>= 50K bp)
22,876,891
Total Contigs
2,675
Largest Contig
485,094
Total Length
40,093,314
GC (%)
46.12
N50
64,473

Learn more about blob plots.

Blob Plot

Variants

PsiT1 c.362A>G p.Glu121Gly missense variant & splice region variant moderate CM039007.1 1663786

IGV: Start, Jump

A/G
PsiT1 c.640A>C p.Ile214Leu missense variant moderate CM039007.1 1664184

IGV: Start, Jump

A/C
PsiT1 c.1735G>A p.Val579Ile missense variant moderate CM039007.1 1666040

IGV: Start, Jump

G/A
PsiT1 c.1736T>C p.Val579Ala missense variant moderate CM039007.1 1666041

IGV: Start, Jump

T/C
PsiT1 c.2254A>G p.Arg752Gly missense variant moderate CM039007.1 1666622

IGV: Start, Jump

A/G
PsiH c.20C>T p.Ser7Phe missense variant moderate CM039007.1 1667530

IGV: Start, Jump

C/T
PsiM c.305G>A p.Arg102Lys missense variant moderate CM039007.1 1674573

IGV: Start, Jump

C/T
PsiD c.617G>A p.Gly206Asp missense variant moderate CM039007.1 1676885

IGV: Start, Jump

C/T
PsiD c.616G>A p.Gly206Ser missense variant moderate CM039007.1 1676886

IGV: Start, Jump

C/T
PsiD c.66G>T p.Leu22Phe missense variant moderate CM039007.1 1677485

IGV: Start, Jump

C/A

Nearest genetic relatives (All Samples)

0 0.033 0.067 0.100 0.133
  1. 0.022 McKennaii-1-PS (PSP10069)
  2. 0.023 Bplus-3-PS (PSP10001)
  3. 0.027 GoldenCoast-BAF-A1-UM (PSP10105)
  4. 0.030 GoldenCoast-BAF-A2-UM (PSP10106)
  5. 0.035 Bplus (PSP10088)
  6. 0.038 HUA-Early (PSP10092)
  7. 0.041 Golden-Teacher (PSP10089)
  8. 0.045 Bplus-2-redo-SW (PSP10015)
  9. 0.047 Bplus-1-redo-SW (PSP10014)
  10. 0.047 Bplus-3-redo-SW (PSP10016)
  11. 0.047 GoldenTeacher-3-SW (PSP10029)
  12. 0.047 Huautla-3-PS (PSP10005)
  13. 0.048 Maui-2-PS (PSP10041)
  14. 0.049 Ecuador-3-SW (PSP10025)
  15. 0.049 Ecuador-3-PS (PSP10061)
  16. 0.050 Z-strain-3-PS (PSP10084)
  17. 0.051 Maui-1-PS (PSP10040)
  18. 0.051 Maui-3-PS (PSP10042)
  19. 0.051 Huautla-3-redo-SW (PSP10031)
  20. 0.054 Puerto-Rican-ITW (PSP10078)

Most genetically distant strains (All Samples)

0 0.183 0.367 0.550 0.733
  1. 0.722 Penvy-1-PS (PSP10045)
  2. 0.722 Penvy-Col5-PS (PSP10044)
  3. 0.722 Penvy-Col4-PS (PSP10043)
  4. 0.721 Penvy-2-SW (PSP10075)
  5. 0.665 Costa-Rica-1-redo-SW (PSP10022)
  6. 0.662 Costa-Rica-2-redo-SW (PSP10023)
  7. 0.659 Treasure-coast-1-PS (PSP10054)
  8. 0.659 Treasure-coast-3-PS (PSP10056)
  9. 0.659 Treasure-coast-2-PS (PSP10055)
  10. 0.656 Treasure-Coast-2-Mush (PSP10082)
  11. 0.634 Costa-Rica-3-redo-SW (PSP10024)
  12. 0.620 Bplus-ITW-WM (PSP10129)
  13. 0.614 Arenal-Volcano-1-Mush (PSP10059)
  14. 0.610 Luminous-lucies-2-PS (PSP10032)
  15. 0.610 Orissa-India-1-Mush (PSP10072)
  16. 0.610 Luminous-lucies-1-PS (PSP10034)
  17. 0.610 Orissa-India-4-Mush (PSP10073)
  18. 0.610 Luminous-lucies-3-PS (PSP10033)
  19. 0.608 Roatan-Honduras-4-Mush (PSP10079)
  20. 0.605 ColumbiaRust-1-SW (PSP10021)

Blockchain Registration Information

Transaction ID
e5635105fb4d2d1cd66e3519586d126205673327b68d9a8972b69a5ed948ddc9
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
3de7c0c2be1a76c2956c5dc197f41848c210f7292b6d9e2e9d9b54fe417fd808
QR code for PSP10071

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