Orissa-India-1-Mush
PSP 10072
DNA Source: Mushrooms.com
General Information
- Accession Date
- June 13, 2021
- Report Type
- Whole-Genome Sequencing
- DNA Source Website
- mushrooms.com
Genetic Information
File Downloads
These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.
- No. of Contigs (>= 25K bp)
- 525
- No. of Contigs (>= 50K bp)
- 167
- Total Length (>= 25K bp)
- 25,356,801
- Total Length (>= 50K bp)
- 13,125,098
- Total Contigs
- 40,201
- Largest Contig
- 221,724
- Total Length
- 102,516,680
- GC (%)
- 46.02
- N50
- 6,552
Variants
| PsiT1 | c.496A>C | p.Lys166Gln | missense variant | moderate | CM039007.1 | 1663979 | A/C |
| PsiT1 | c.874G>T | p.Ala292Ser | missense variant | moderate | CM039007.1 | 1664470 | G/T |
| PsiT1 | c.1702C>A | p.Leu568Met | missense variant | moderate | CM039007.1 | 1665646 | C/A |
| PsiT1 | c.2237A>G | p.Glu746Gly | missense variant | moderate | CM039007.1 | 1666605 | A/G |
| PsiH | c.363C>A | p.Asp121Glu | missense variant | moderate | CM039007.1 | 1667977 | C/A |
| PsiH | c.379A>G | p.Arg127Gly | missense variant | moderate | CM039007.1 | 1667993 | A/G |
| PsiH | c.404G>C | p.Ser135Thr | missense variant | moderate | CM039007.1 | 1668018 | G/C |
| PsiH | c.412G>A | p.Gly138Ser | missense variant | moderate | CM039007.1 | 1668026 | G/A |
| PsiH | c.413G>A | p.Gly138Asp | missense variant | moderate | CM039007.1 | 1668027 | G/A |
| PsiH | c.419A>G | p.Lys140Arg | missense variant | moderate | CM039007.1 | 1668033 | A/G |
| PsiH | c.451C>A | p.His151Asn | missense variant | moderate | CM039007.1 | 1668065 | C/A |
| PsiH | c.1210G>A | p.Asp404Asn | missense variant | moderate | CM039007.1 | 1669172 | G/A |
| PsiH | c.1220T>A | p.Val407Glu | missense variant | moderate | CM039007.1 | 1669182 | T/A |
| PsiM | c.357T>A | p.Cys119* | stop gained | high | CM039007.1 | 1674466 | A/T |
| PsiD | c.928A>G | p.Ile310Val | missense variant | moderate | CM039007.1 | 1676574 | T/C |
| PsiD | c.919G>C | p.Val307Leu | missense variant | moderate | CM039007.1 | 1676583 | C/G |
| PsiD | c.856C>A | p.Leu286Ile | missense variant | moderate | CM039007.1 | 1676646 | G/T |
| PsiD | c.623A>C | p.Asn208Thr | missense variant | moderate | CM039007.1 | 1676879 | T/G |
| PsiD | c.279G>C | p.Gln93His | missense variant | moderate | CM039007.1 | 1677223 | C/G |
Nearest genetic relatives (All Samples)
0
0.092
0.183
0.275
0.367
- 0.094 Orissa-India-4-Mush (PSP10073)
- 0.173 Penvy-1-PS (PSP10045)
- 0.173 Penvy-2-SW (PSP10075)
- 0.173 Penvy-Col5-PS (PSP10044)
- 0.173 Penvy-Col4-PS (PSP10043)
- 0.331 MGC 2016 unknown strain (PSP10012)
- 0.333 Z-strain-1-Mush (PSP10083)
- 0.338 Costa-Rica-1-redo-SW (PSP10022)
- 0.341 Costa-Rica-2-redo-SW (PSP10023)
- 0.348 Costa-Rica-3-redo-SW (PSP10024)
- 0.349 Bplus-ITW-WM (PSP10129)
- 0.354 Roatan-Honduras-4-Mush (PSP10079)
- 0.355 ColumbiaRust-1-SW (PSP10021)
- 0.358 Treasure-Coast-2-Mush (PSP10082)
- 0.360 Treasure-coast-3-PS (PSP10056)
- 0.360 Treasure-coast-1-PS (PSP10054)
- 0.361 Treasure-coast-2-PS (PSP10055)
- 0.361 Arenal-Volcano-1-Mush (PSP10059)
- 0.364 Tosohatchee-print-ITW (PSP10081)
- 0.366 Luminous-lucies-2-PS (PSP10032)
Most genetically distant strains (All Samples)
0
0.158
0.317
0.475
0.633
- 0.617 Bplus-3-PS (PSP10001)
- 0.616 Huautla-3-redo-SW (PSP10031)
- 0.616 Huautla-2-redo-SW (PSP10030)
- 0.616 Huautla-3-PS (PSP10005)
- 0.614 GoldenCoast-BAF-B1-UM (PSP10107)
- 0.614 Puerto-Rican-ITW (PSP10078)
- 0.614 GoldenCoast-BAF-B2-UM (PSP10108)
- 0.613 Maui-2-PS (PSP10041)
- 0.612 Bplus-2-redo-SW (PSP10015)
- 0.612 GoldenCoast-BAF-A1-UM (PSP10105)
- 0.612 Maui-1-PS (PSP10040)
- 0.611 Bplus-1-redo-SW (PSP10014)
- 0.611 Bplus-3-redo-SW (PSP10016)
- 0.611 Maui-3-PS (PSP10042)
- 0.611 GoldenCoast-BAF-A2-UM (PSP10106)
- 0.610 GoldenTeacher-3-SW (PSP10029)
- 0.610 Orissa-India-ITW (PSP10071)
- 0.610 Ecuador-3-SW (PSP10025)
- 0.610 Gulf-Coast-BAF (PSP10090)
- 0.610 Gulf-Coast (PSP10091)
Blockchain Registration Information
- Transaction ID
-
387bbc683294cb9a
af7cd1ef23a53bff 6d38077d547c9339 102e26d05553548d - Stamping Certificate
- Download PDF (39.5 KB)
- SHASUM Hash
-
315a6829d505f3299eafe04ae4b86e76 c85f7b20540cd6fb 1847100365f37873
