Costa-Rica-1-redo-SW

PSP 10022

DNA Source: SporeWorks

General Information

Accession Date
May 11, 2021
Report Type
Whole-Genome Sequencing
DNA Source Website
sporeworks.com

Genetic Information

These charts represent the Illumina sequence coverage over the Psilocybin synthase genes.

Psilocybin Synthase Gene Coverage

Learn more about read coverage plots.

Read Coverage
No. of Contigs (>= 25K bp)
1
No. of Contigs (>= 50K bp)
0
Total Length (>= 25K bp)
26,497
Total Length (>= 50K bp)
0
Total Contigs
19,543
Largest Contig
26,497
Total Length
13,263,210
GC (%)
44.87
N50
652

Learn more about blob plots.

Blob Plot

Variants

PsiT1 c.1616A>G p.His539Arg missense variant moderate CM039007.1 1665560

IGV: Start, Jump

A/G
PsiT1 c.1626G>A p.Met542Ile missense variant moderate CM039007.1 1665570

IGV: Start, Jump

G/A
PsiT1 c.1714A>G p.Asn572Asp missense variant moderate CM039007.1 1665658

IGV: Start, Jump

A/G
PsiT1 c.1720+1G>T splice donor variant & intron variant high CM039007.1 1665665

IGV: Start, Jump

G/T
PsiT1 c.1735G>A p.Val579Ile missense variant moderate CM039007.1 1666040

IGV: Start, Jump

G/A
PsiT1 c.1736T>C p.Val579Ala missense variant moderate CM039007.1 1666041

IGV: Start, Jump

T/C
PsiT1 c.2065T>G p.Leu689Val missense variant moderate CM039007.1 1666433

IGV: Start, Jump

T/G
PsiT1 c.2237A>G p.Glu746Gly missense variant moderate CM039007.1 1666605

IGV: Start, Jump

A/G
PsiT1 c.2254A>G p.Arg752Gly missense variant moderate CM039007.1 1666622

IGV: Start, Jump

A/G
PsiT1 c.2573A>T p.Gln858Leu missense variant moderate CM039007.1 1666941

IGV: Start, Jump

A/T
PsiM c.305G>A p.Arg102Lys missense variant moderate CM039007.1 1674573

IGV: Start, Jump

C/T

Nearest genetic relatives (All Samples)

0 0.092 0.183 0.275 0.367
  1. 0.134 Costa-Rica-3-redo-SW (PSP10024)
  2. 0.140 Costa-Rica-2-redo-SW (PSP10023)
  3. 0.226 Costa-Rica-1-redo-SW (PSP10003)
  4. 0.239 Costa-Rica-2-redo-SW (PSP10004)
  5. 0.270 Penvy-Col5-PS (PSP10044)
  6. 0.270 Penvy-1-PS (PSP10045)
  7. 0.271 Penvy-2-SW (PSP10075)
  8. 0.271 Penvy-Col4-PS (PSP10043)
  9. 0.323 Roatan-Honduras-4-Mush (PSP10079)
  10. 0.328 Treasure-coast-1-PS (PSP10054)
  11. 0.328 Treasure-coast-3-PS (PSP10056)
  12. 0.328 Treasure-coast-2-PS (PSP10055)
  13. 0.328 Treasure-Coast-2-Mush (PSP10082)
  14. 0.331 ColumbiaRust-1-SW (PSP10021)
  15. 0.331 Orissa-India-4-Mush (PSP10073)
  16. 0.332 Arenal-Volcano-1-Mush (PSP10059)
  17. 0.332 Bplus-ITW-WM (PSP10129)
  18. 0.336 Luminous-lucies-2-PS (PSP10032)
  19. 0.337 Luminous-lucies-3-PS (PSP10033)
  20. 0.337 Luminous-lucies-1-PS (PSP10034)

Most genetically distant strains (All Samples)

0 0.175 0.350 0.525 0.700
  1. 0.669 Bplus-3-PS (PSP10001)
  2. 0.668 GoldenCoast-BAF-B1-UM (PSP10107)
  3. 0.668 Maui-2-PS (PSP10041)
  4. 0.667 Huautla-3-PS (PSP10005)
  5. 0.667 GoldenCoast-BAF-B2-UM (PSP10108)
  6. 0.667 Huautla-3-redo-SW (PSP10031)
  7. 0.666 GoldenCoast-BAF-A1-UM (PSP10105)
  8. 0.666 Bplus-2-redo-SW (PSP10015)
  9. 0.666 Huautla-2-redo-SW (PSP10030)
  10. 0.666 Bplus-1-redo-SW (PSP10014)
  11. 0.666 Bplus-3-redo-SW (PSP10016)
  12. 0.665 Maui-3-PS (PSP10042)
  13. 0.665 GoldenTeacher-3-SW (PSP10029)
  14. 0.665 Puerto-Rican-ITW (PSP10078)
  15. 0.665 Maui-1-PS (PSP10040)
  16. 0.665 Ecuador-3-SW (PSP10025)
  17. 0.665 Orissa-India-ITW (PSP10071)
  18. 0.665 GoldenCoast-BAF-A2-UM (PSP10106)
  19. 0.662 Golden-Teacher (PSP10089)
  20. 0.662 GoldenTeacher-1-SW (PSP10027)

Blockchain Registration Information

Transaction ID
c23961a1d9c4c39467d4f2e7600528ca4283dd75c1014e6c3d775e94af734c04
Stamping Certificate
Download PDF (39.6 KB)
SHASUM Hash
c97d9754aeff2793a86a7421ac16f16d2a801071f524fb4c5500550949a6e1ab
QR code for PSP10022

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